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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
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Data Ecosystem
… cohesive data standards, the JGI partners with a number of facilities.  … Through its partnership with NERSC and the … to facilitate these efforts. Particular areas of emphasis will be the development of tools and … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to …
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Viral dark matter and virus–host interactions resolved from publicly available microbial genomes
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Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
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Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes
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Finished Genome of Zymomonas mobilis subsp. mobilis Strain CP4, an Applied Ethanol Producer
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UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota
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Mechanistic insights into consumption of the food additive xanthan gum by the human gut microbiota
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Game On: High School Students Drive Everglades Metagenomics Study
In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed the soil samples, the JGI offered 7 … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … and environments, including natural and agricultural soils, human- and animal-host associated, and ocean and other …
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JGIota: Looking Back at Sequencing for Soybeans
The soybean is a crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome …
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