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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & …
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A haplotype-resolved reference genome for Eucalyptus grandis
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Natural Prodcast Episode 8: Eric Schmidt
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back … 8 of Natural Prodcast. This week, we have our conversation with Professor Eric Schmidt, from the University of Utah. …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … to convert food into energy. However, in environments with little or no oxygen, life had found other ways to … uncharacterized prokaryotes, including two bacteria isolated by their lab. KBase was used to rapidly assemble …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … 2 of our “primer” episode, so if you ended up here somehow without having listened to the first part, you might be a … and you can see that different Frankia have different size genomes depending on what kinds of plants, and what kinds of …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … phyla across virtually every ecosystem.” By significantly expanding the known diversity of these viruses, genomic …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have developed a genomic model to study drought tolerance in perennial … ( Panicum virgatum ) is a candidate bioenergy feedstock with a complex genome with multiple copies of its …
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Reference genome sequence of the model plant Setaria
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The Reference Genome of the Halophytic Plant Eutrema salsugineum
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A Catalog of Reference Genomes from the Human Microbiome
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Operating Expenses
… FY2025 Spending Profile The JGI is funded primarily by the DOE Office of Biological and Environmental Research (BER), a program within the DOE Office of Science. …
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Biodesign
… automations for DNA design, assembly and analysis Overview of biodesign products The JGI Biodesign platform enables users to validate hypotheses generated from mining genomic data by designing and assembling physical DNA … BOOST provides a suite of tools to automate sequence design for assembly by Gibson, …
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