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Comparative Genomics Analysis of Trichoderma reesei Strains
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Krishna Palaniappan
Krishna is responsible for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and …
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User Programs
For accepted proposals, sequencing, synthesis, metabolomics and analysis will be paid for by the Department of Energy’s funding of the JGI. There is no cost to the user and no granting …
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The IMG/M data management and analysis system v.7: content updates and new features.
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Natural Prodcast Episode 21: Elizabeth Parkinson
… right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. This should be coming out on the first … exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … unknown. And so we've done the sequence similallity network analysis where we look for other receptors with sequence …
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JGI@25: From Life at the Extremes to Editing Genomes
In honor of the JGI's 25th anniversary in 2022, we have … is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine in Iron … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … of Georgia, along with 100 of his colleagues in the comparative plant genomics community. The project’s aim is … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral … Evol . 6(7):965-978. Grigoriev et al (2021) PhycoCosm, a comparative algal genomics resource.  Nucleic Acids Res. … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of …
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Jane Grimwood Named HudsonAlpha Genomics Chair
City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 … and biology of human chromosome 19 The DNA sequence and comparative analysis of human chromosome 5 The sequence and …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse … from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis is one of …
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