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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications … resource, but also yielding and supporting many high-impact publications ,” emphasized Markus Göker, who managed the …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
For the first time, a team has comprehensively described … painting a more systematic picture through single-cell and metagenomic sequencing. A team co-led by Mária Džunková, … sequence both a cell’s genome and detect accompanying viral sequences, which would suggest the virus had been infecting …
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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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Deconvolute individual genomes from metagenome sequences through short read clustering
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth (Toby) Kellogg and … National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and released a …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and … relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … called crassulacean acid metabolism, or CAM — that’s C-A-M, for short — helps plants that have it lose less water in a …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural … so secondary metabolism is throughout nature, except maybe for animals and humans, not as much. You know, we have this …
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Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines
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Community Science Program
The Community Science Program (CSP) provides the scientific community at large with … sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … more customized analysis, the JGI also participates in publication of results. See more details on our Review …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … challenges, characterizing viruses is a key step. For decades, though, many viruses have been somewhat … Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in …
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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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