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Complete Genome Sequence and Updated Annotation of Desulfovibrio alaskensis G20
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Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)
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Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
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IMG ER: a system for microbial genome annotation expert review and curation
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … Facility. Grigoriev and his team at the JGI contributed to annotation of the genomes, available online at  PhycoCosm …
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How To Use Our Systems
… One of the JGI’s key assets is our user community, comprising a … have yielded numerous, high-quality outputs, such as data, publications and software. The JGI supports the entire data … This allows us to provide diverse scientific communities with large amounts of standardized high-quality data and …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … able to receive training for the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) portal for their sample … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about …
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New and Improved: Eucalyptus Reference is Now Accessible
… a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to … were conducted by the JGI, along with genome assembly and annotation. Genome contiguity of the 2025 phased reference …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to … to balance its  Data Release and Utilization Policies with the DOE mandate to provide data access widely to the … are requested to be held until a specified date, or the publication date, whichever comes first. For nearly 40 …
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Four chromosome scale genomes and a pan-genome annotation to accelerate pecan tree breeding
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The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4)
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