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Dominant nitrogen metabolisms of a warm, seasonally anoxic freshwater ecosystem revealed using genome resolved metatranscriptomics
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to … leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… on root-associated microbiomes. Scientists conducted a shotgun metagenomic survey on three types of conifers–limber … in part by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … and functional potential of the phyllosphere, extending beyond the leaf surface to broader forest and ecosystem …
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Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics
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Deeply conserved synteny resolves early events in vertebrate evolution
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Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of … symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  … systems of these two organisms suggested new possibilities beyond the current understanding that CRISPR-Cas systems …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along with highlighting the viruses in a given sample, metagenomics shed light on another key aspect of viruses in … the world, finding over 125,000 partial and complete viral genomes. That study multiplied the number of known viral …
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How to Submit Sequencing Samples
… Project Manager (PM) a list of organism names (or for metagenomes, sample names).  Need help naming your organisms? …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of … sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and … a single-cell-based discovery pipeline and enrichment metagenomics for terrestrial protists. These approaches …
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