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Plant myo-inositol transport influences bacterial colonization phenotypes
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied … The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint Genome … the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis team synthesized and cloned both chitosanase genes …
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A single-base resolution map of an archaeal transcriptome
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER … ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If … The JGI is inviting researchers using the U.S. Culture Collection Network (USCCN) to …
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Frederik Schulz
… Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in … B.Sc. Biochemistry, University of Applied Sciences Mannheim (Germany) M.Sc. Molecular …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies … and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … Neighbor (KNN) Classification. LDA is a supervised data compression technique that was used to take the …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … This research was supported in part by the Allen Distinguished …
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Rex Malmstrom
… Dr. Malmstrom is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI … and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. Later during his postdoctoral … Ph.D. in Marine Biology/Biochemistry, University of Delaware BA in …
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … genomes that are both large and complex. The first publication of a genome generated by the OGG initiative — … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets …
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De novo DNA synthesis using polymerase-nucleotide conjugates
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