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Who We Are
… of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and support staff in the … science user facility located at Lawrence Berkeley National Laboratory ( Berkeley Lab ), and part of the …
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Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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How to Submit Sequencing Samples
… Below is a brief description of the process needed to prepare and ship samples for sequencing by the JGI.  Additionally it includes instructions on accessing sample-level reports and tracking … at the JGI. The quality of the starting material is one of the greatest predictors of a successful sequencing …
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JGI Portals
… new algorithms, models and tools in support of DOE mission priorities. Data discoverability and accessibility are … the use of an ORCID account with two-factor authentication enabled to log in. Check our Help Site for additional information, including a Login Walkthrough and FAQ . …
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Natural Prodcast Episode 15: Katherine Duncan
… Dan Udwary: Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk … we have a Scripps background shared together, although I don’t think we overlapped. Kate Duncan: No. Dan Udwary: I … I wouldn’t say I was one of these people that wants to study oceanography and was fascinated by the oceans, though …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… it. I’m keeping to my schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make this whole “on-time thing” a habit! I’m really not good at that, you … Natural Prodcast's interview with Elizabeth "Betsy" Parkinson, from Purdue, about bacterial signaling molecules and …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … below the Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact …
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A Bioinformatician's Guide to Metagenomics
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Behind the Paper: Hot Springs Metagenomics
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Natural Prodcast Episode 23: Aaron Puri
… another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, which is not ideal for me keeping myself on my self-imposed schedule. So, we’ll have to see if I’m … Natural Prodcast talks to Aaron Puri, from the University of Utah’s Chemistry Department. …
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Natural Prodcast Episode 2: The Primer, Part 2
… Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hi, again. This is Dan, and you’re listening to the second episode of the Natural Prodcast. This is part 2 of our … secrete a lot more things than people do…? Although I don’t study people so maybe I’m wrong. But yeah, I mean, because I …
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