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Programs & Platform Leads
… of complex biological, earth, and environmental systems for energy and infrastructure security. In complement to … drive innovations that cross the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, … infrastructure of Genomic Technologies and Data Science & Informatics. The JGI also sustains a vibrant community …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while … studies to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to …
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Mitochondrial ATP generation is more proteome efficient than glycolysis
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive … 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? A(nswer): Our … used by JGI to create these syntenic analysis? In case, we tried to reproduce it or even to use the results in …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 … world. These tools give researchers a way to access much more information about fungi in these environments. “Now … mycorrhizal symbionts shuttle water and nutrients to trees; plant pathogens colonize living plants to feed on them.  …
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The Big Deal About Short Plants
… Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But sequencing the genome of one short plant — fire moss — had an unexpected hurdle: ginormous sex …
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Strategies for community-sourced biocuration in bioinformatics: a case study on MIBiG 4.0
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… been revisiting a number of notable achievements that showcase our collaborations and capabilities to enable great … a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … have delivered results, they have also snowballed into more collaborations. One of O’Malley’s former postdocs, …
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Mining Metagenomes for Cas Proteins
… led by Jennifer Doudna’s group at the University of California (UC), Berkeley, which is also affiliated with … identified were found within the archaeal superphylum DPANN, named by a JGI-led team for the first five groups … and Nanohaloarchaea. This work represents an excellent showcase of the unique capabilities provided from the IMG/M …
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2024 Progress Report
… also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department … to realize our new vision to, “ Lead genomic innovation for a sustainable bioeconomy ” — as articulated in our new … increased number of users with a record output of products, making data easier to access and use, and by investing in …
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Picking Up Threads of Cotton Genomics
… the cotton fields look like popcorn is literally growing on plants, with fluffy white bolls bursting out of the green … , both faculty investigators at the HudsonAlpha Institute for Biotechnology. “The goal has been for all this new … for  Cotton Incorporated , the research and marketing company representing upland cotton funded by U.S. growers of …
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