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Dealing with Drought: Uncovering Sorghum’s Secrets
U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence … that makes up an individual’s genome. The genes of sorghum plants are likely responsible for the crop’s ability to … exactly water becomes a limiting factor – before or after flowering. For the study, the team grew two sorghum …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … and as a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial crops such as … of genomic, quantitative genetic, landscape, and niche modeling approaches, we contrasted the diversity of 4X and …
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Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger
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FunGAP: Fungal Genome Annotation Pipeline using evidence-based gene model evaluation.
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Making a Lichen Together
… to better understand lichen. The Impact Lichens are a model for inter-kingdom communication and cooperation. Their partnership is … grayi, and the microalga,  Asterochloris glomerata . To see how gene expression changes when living together versus …
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Genome-wide identification of bacterial plant colonization genes
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Elucidating Bacterial Gene Functions in the Plant Microbiome
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Network Modeling of Complex Data Sets
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JGI@25: Using Team Science to Build Communities Around Data
… our understanding of 1 billion years of evolution in Kingdom Fungi — from phylogenetic relationships to evolution of genomic mechanisms — … or C-fern — came out in the September issue of Nature Plants . C-fern has a genome approximately three times the …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was … development in Setaria viridis and maize. Nature Plants 3:17054. Schmutz, J, & McClean P et al. 2014. A … & Schmutz, J et al. 2012. Reference genome sequence of the model plant Setaria. Nature Biotechnology 30: 555-561. The …
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A Plant Root Atlas for Tracking Developmental Trajectories
… an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and … the largest integration of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell types in the plant …
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The F-Box Gene Family Is Expanded in Herbaceous Annual Plants Relative to Woody Perennial Plants  
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