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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … of proteins, including those with pivotal applications in biotechnology, such as DNA editing enzymes.” Leveraging … Division,” Pavlopoulos said. “They developed parallel algorithms to perform ‘all-vs-all’ comparisons and graph …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … analysis of specialized metabolism in bioenergy crops: current progress and challenges , details how an … at Northwestern University, and researchers at the biotech company LanzaTech to develop a “cell-free” gene …
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Ben Bowen
Specializing in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating … Bowen, B., & Pan, C. (2014). MIDAS: a database-searching algorithm for metabolite identification in metabolomics. …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … Berkeley National Laboratory, the HudsonAlpha Institute for Biotechnology, and Duke University, published their research … explore,” he recalled. His project involved developing an algorithm and although the scope of work was established …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a host, and not just any host will do. … This information could open the door to improving crop yields and a better understanding of the roles viruses …
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Making a Lichen Together
The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) participants. One is a fungus (usually belonging to the ascomycetes, one of the two main branches of … bioengineering symbiotic microbial consortia for bioenergy crops. And because lichens are dominant carbon and nitrogen …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. … worked with Nicole Johnson in Wang’s group on developing an algorithm for RNA-Seq assembly. RNA-Seq is a technique for …
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions at Cornell, IBM, Utah State University, … 644-672 A Sreedasyam et al., 2023. JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene …
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JGI on the 2021 Highly Cited Researchers List
… among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen field or fields … could be useful toward the DOE’s interest in harnessing the crop toward producing sustainable alternative fuels Igor … explore viral genetic diversity toward innovative biotechnological and industrial applications. Videos from …
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Alabama A&M Interns Access An Abundance of Knowledge
In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an internship … genomics, because this work is essential for improving crop resilience through climate change. Ti’Yanna Watson: The …
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Natural Prodcast Episode 8: Eric Schmidt
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science …
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The JGI Data Portal: Improving User Experience
… human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience … the promise of an immediate benefit. The Data Portal — an updated alternative to the Genome Portal — seeks to more …
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