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Genomics discovery of giant fungal viruses from subsurface oceanic crustal fluids
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Guidelines for public database submission of uncultivated virus genome sequences for taxonomic classification
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Data Ecosystem
… analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its … Huntemann, Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of … ,  summarizing insights from three decades of work on giant viruses — providing a perspective on giant virus diversity, …
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Exploring the Diversity of the American Prairie’s Switchgrass
… potential biofuel feedstock. But switchgrass has a complex genome and, as a species, encompasses dizzying diversity. …
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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025)
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Virus species names have been standardized; virus names remain unchanged
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … the design of new experimental approaches to link viruses to their host(s), collaboration with JGI users for … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology …
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Emiley Eloe-Fadrosh
… genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics … training in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of … Institution of Oceanography. She stepped into the Metagenome Program Lead position in 2017. She also leads the …
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Towards a genome-based virus taxonomy
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Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2024)
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