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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … developed thousands of DNA constructs encoding a molecular tool to repress targeted genes in the organism. The team demonstrated that this tool, called CRISPR inhibition or CRISPRi, works (see the …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in … JGI mentor, Zhong Wang. Together, they worked to develop a tool that leveraged machine learning to help users determine … maintains this expectation of his UC Merced interns today. Additionally,  the entire cohort is required to …
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A Plant Root Atlas for Tracking Developmental Trajectories
… zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … the roles played by neighboring cells in these processes.   One of the study’s co-authors is  Benjamin Cole , a research …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … A: It takes a few months to go from start to finish, i.e., QC to separation to library sequencing and assembly. Like …
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VEGA Symposium
…   Register here  Registration fees:  Early Bird rates available now General & Berkeley … Genome Institute, the 5th Viral EcoGenomics and Applications (VEGA) symposium will take place November 18-19, 2026 on the UC Berkeley campus. Organized every two years since …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National … is JGI software developer Brian Bushnell, no alignment-free tool exists for proteins. (And while Mash and BBsketch can … Resources Division (CRD), in order to create more useful tools for the bioinformatics community. Other work presented …
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Industry Engagement Program
… As a National User Facility, the JGI serves more than 2,500 users … from the public sector: academic and government institutions — with capabilities that had remained largely unknown … data repositories for genome information with analysis tools for mining and prediction The JGI works in partnership …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … of fern biology and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii show a long … The Impact There are over 10,400 species of ferns alive today. Boasting adaptations in order to protect themselves …
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Strain Engineering
… yeasts and algae previously with little to no genetic tools enabling heterologous expression and functional exploration.  The developed strains represent an …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, … managing public viral genomics resources such as analytical tools and data repositories to two projects funded through …
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The Expanding Universe of Methane Metabolisms in Archaea
… Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis … and how it gave rise to the different pathways we see today is not only important to understand early life, but …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… strategic plan outlines how the JGI will advance the bioeconomy, leveraging partnerships to advance foundational … expect to offer our user community an exciting range of new tools and capabilities to support their scientific … Standardizing and streamlining the JGI’s data systems and tools, as well as interweaving those efforts into a wider …
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