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Fungal Friends or Foes in Plant Roots
… Uncovering associations between plant roots and fungi that can help or harm … host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … on the fungal Tree of Life through the 1000 Fungal Genomes Project. Hacquard’s group had assembled a mycobiome culture …
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Webinar: MycoCosm Tutorial
… about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … genomes and those external genomes that enable JGI CSP projects – please first contact us at [email protected] … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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A User-Centered Approach to Accessing JGI Data
… (https://data.jgi.doe.gov/) launched last year, it was only accessible through the plant portal  Phytozome . Now … limited to: Public data: datasets associated with completed projects that are eligible for public release, have … out to KBase regarding use of our search API. They have expressed an interest in using this to find files based on …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining lab protocols at the bench to … Brandon Imstepf一were selected to continue their research projects through the DOE RENEW grant initiative when school …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the … FY2024 EMSL-JGI FICUS collaborative proposal call . Letters of Intent for the joint call are due March 7, 2024. The … from the JGI and EMSL in one proposed research project. In the same proposal, researchers can also request …
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User Support Analysis Group
… The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …
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Improving the Cacao Genome and Phytozome
… brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production … fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s … Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… recognize that crop varieties grow best in certain regions. Most plant species have adapted to their local … crop and ornamental seeds sold for the upper Midwest are often very different than those bred for Texas. Identifying … fellow in the Juenger lab and continues to work on the project from a lab at Michigan State University that is …
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers … to experimentally determine that Nanohaloarchaeota are symbionts, rather than free-living organisms as had been … The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … (Berkeley Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial … hope JGI and other institutions continue to do this kind of projects.” The work also used resources of the  National …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as … to know at the beginning of my career, with my postdoctoral project beginning with her strains,” Wessler explained. “She … Where are they, what are they doing, and what traits are expressed based on their movement? Through the recombination …
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