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JGI@25: A Single Cell, Myriad Microbial Discoveries
… uncultured in laboratories. Other firsts followed. The next year, the JGI team reported the first closed and finished … deep-sea, oil-eating bacterium from a single cell. Several years later, the continuing single cell sequencing … JGI’s single cell genomics capabilities to assemble, identify, and characterize more than 200 microbial genomes that …
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Boosting Small Molecule Production in Super “Soup”
… powerful at finding ways to accelerate bio-design and identifying the best sets of enzymes that enable synthesis of … Though such visits have been impossible for the past year and a half, “the logistics haven’t changed,” noted … Rasor said. “So they can push more of the carbon that we feed into a product molecule and so we’re able to make the …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… with each intern’s interests or educational goals.  This year’s internship program was remote in its entirety due to … of our work,” said Nigel Mouncey, JGI Director. “This year is unlike any other year, but we’ve had another successful year. I was so …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements … any kind of biomass breakdown. They’ve spent millions of years evolving tactics against potential threats. “Because … team leveraged transcriptomics and other assays to identify and test carbohydrate-active enzymes. They found many …
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JGI@25: From Life at the Extremes to Editing Genomes
… other enzymes in the CRISPR-Cas system. For the past few years they have partnered with JGI’s Microbiome Data Science … in a Two-Protein-type V-C CRISPR System. Mol Cell. 2019 Feb 21;73(4):727-737.e3. doi: …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… it yourself  here .) She translated her abstract from a 2019 conference. Both versions appear side-by-side below: …
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Emiley Eloe-Fadrosh
… from host-associated and environmental samples to identify and characterize genomic information from uncultivated … science. Rev. Microbiol. 18:313-314. Roux S, et al. 2019. Cryptic inoviruses are pervasive in bacteria and … biomes. Nature Microbiol. 4: 1895-1906. Roux S, et al. 2019. Minimum information about an uncultivated virus genome …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a wildfire. The Science After a wildfire burns, … using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, bacteria and viruses … that burned at the Colorado-Wyoming border, about a year after the fire. They sampled soil across a variety of …
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A More Intuitive Phytozome Interface
… Phytozome accessible as an interactive website. Since May 2019, v12 has not had any additional genomes added to it, … genomes and has been under active development for over 5 years, provides users with the genome browsers, gene pages, … restoration. They include Jalview (for viewing and modifying multiple sequence alignments). Variation view on …
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John Vogel
… served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of … Varoquaux, et. al.N. 2019 Transcriptomic analysis of field-droughted sorghum from … Natl. Acad. Sci. 116 (52) 27124-27132 Sasse, et. al.J. 2019 Multilab EcoFAB study shows highly reproducible …
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Boosting Small Molecule Production in Super “Soup”
… powerful at finding ways to accelerate bio-design and identifying the best sets of enzymes that enable synthesis of … Though such visits have been impossible for the past year and a half, “the logistics haven’t changed,” noted … Rasor said. “So they can push more of the carbon that we feed into a product molecule and so we’re able to make the …
Learn more
What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities … since 2014 to learn more about the microbial responses and feedbacks to warming through the whole soil profile. The … University of Arizona to learn more about climate change feedbacks including drought and increasing temperatures on …
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