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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… the number of known viral genes by a factor of 16. The same year, the JGI expanded its existing Integrated Microbial … exponentially. The latest release, IMG/VR v4 features over 15 million viral genomes, and  this most recent version is six times larger than the previous one . To identify so many genomes, JGI researcher Antonio Camargo developed …
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Workforce Development & Education Outreach
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JGI@25: Using Team Science to Build Communities Around Data
… has “significantly advanced our understanding of 1 billion years of evolution in Kingdom Fungi — from phylogenetic … Genomes project. “We currently have 19 genomes sequenced, 15 that are in sequencing or assembly right now, and eight …
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Introducing New Members of the JGI User Executive Committee
… been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve three-year terms and can serve no more than two consecutive terms. …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… for Studies in Bacterial Systematics for the triennium 2017-2020! Established by the University of Queensland in … as the interim deputy for JGI User Programs. Earlier this year, she was elected to the American Academy of … Scientific Achievement , and was among the Lab’s 2015 Women @ the Lab honorees. Woyke is the second JGI …
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Igor Grigoriev
… multicellularity in fungi. Proc Natl Acad Sci U S A. 116(15):7409-7418. Varga et al (2019) Megaphylogeny resolves … life.  Nature Microbiol. 3(12):1417-1428. Haitjema et al (2017) A parts list for fungal cellulosomes revealed by … genomics.  Nature Microbio 2:17087. Mondo et al (2017)  Widespread adenine N6-methylation of active genes in …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements … any kind of biomass breakdown. They’ve spent millions of years evolving tactics against potential threats. “Because … team leveraged transcriptomics and other assays to identify and test carbohydrate-active enzymes. They found many …
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JGI User Executive Committee Expands
… research and don’t award at least 70 research doctorates a year. Coinciding with the election results, Roland … been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve …
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Trent Northen
Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to … 2024 Nature Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. DOI: 10.1126/sciadv.adg7888 … of Science (AAAS), 2022&2023 Biosciences Inventor of the Year 2019 R&D100 Award 2016 Berkeley Lab Director …
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John Vogel
… served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of … New Phytologist 222: 1149-1160  https://doi.org/10.1111/nph.15662 Gordon, et. al. 2017 Extensive gene content variation in the Brachypodium …
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Products
Program Product Description Deliverables Cycle Time FY25 Q1  (median/75th percentile*) DNA Synthesis Constructs … iTag sequencing) Assembly, annotation ( IMG/M ), binning 154/217 Metagenome Standard Draft Short-read assembly & … iTag sequencing) Assembly, annotation ( IMG/M ), binning 154/217 Metagenome Improved Draft Long-read assembly & …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… with each intern’s interests or educational goals.  This year’s internship program was remote in its entirety due to … of our work,” said Nigel Mouncey, JGI Director. “This year is unlike any other year, but we’ve had another successful year. I was so …
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