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Exploring Phages at JGI
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JGI-UC Merced Interns Share Their 2021 Experiences
… returned to re-engage with their mentors from the previous year and continue working on their research project! The …
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Secondary Metabolites Program
DNA synthesis and metabolomics capabilities to identify, express and characterize bioactive secondary metabolite … Identification by in vitro-sequencing (RIViT-seq) to identify RNA polymerase-sigma factor targets, and have expanded … Report Card toolkit (HERC-tk) to enable users to identify the best host to express their BGC(s). This is based on …
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The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
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Three Join the JGI User Executive Committee
… been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve three-year terms and can serve no more than two consecutive terms. …
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Rex Malmstrom
… approach for isolating individual bacterial cells and amplifying their genetic material, thus bypassing the need to … of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative … viruses. Nature Comm . 9 (1), 4881 Tsementzi, D. et al. 2016. SAR11 bacteria linked to ocean anoxia and nitrogen …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… uncultured in laboratories. Other firsts followed. The next year, the JGI team reported the first closed and finished … JGI’s single cell genomics capabilities to assemble, identify, and characterize more than 200 microbial genomes that … microbial lineages from a variety of environments. In 2017, the first New Lineages of Life (NeLLi) workshop was held, …
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iPHoP: A Matchmaker for Phages and their Hosts
… different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data … of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their DNA for genome sequencing was no easy task. The … of Energy Joint Genome Institute (https:// ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by …
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Crysten Blaby-Haas
… and led the Quantitative Plant Science Initiative (2017-2022), a BER Science Focus Area (SFA). In 2022, she joined … heme-binding split-barrel family. J Biol Chem  300(11), 107888. Grosjean N, Yee EF, Kumaran D, Chopra K, Abernathy M, … to carbon metabolism in cyanobacteria. Nature Comm 15:3167. Hammack AT, Blaby-Haas CE. (2024) Machine learning sheds …
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Work With the JGI! Tips for a Winning CSP Proposal
… related to energy and the environment several times a year. A few proposal calls have deadlines coming up – in …
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Meeting Report: “Metagenomics, Metadata and Meta-analysis” (M3) Workshop at the Pacific Symposium on Biocomputing 2010
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