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John Vogel
… he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development … and metabolic responses. Proc. Natl. Acad. Sci. 116 (52) 27124-27132 Sasse, et. al.J. 2019 Multilab EcoFAB study shows highly reproducible physiology and depletion of soil …
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A Powerful Technique to Study Microbes, Now Easier
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“A STEM career is in reach and accessible”
… experiences that increase participation in higher education and access to fulfilling science careers, JGI …
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Behind the Paper: Hot Springs Metagenomics
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Kjiersten Fagnan
… Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … JGI's Chief Informatics Officer. Click to learn more about how the JGI supports the entire data life cycle through … Bell and A.S. Almgren and K.M. Fagnan and M.J. Lijewski. 2012. An Adaptive Mesh Refinement Algorithm for Compressible …
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Mining Metagenomes for Cas Proteins
… disease. Finally, gene editing is being used to understand how a person’s genetic makeup predisposes them to, or … aa. They were initially identified by searching for Cas12d homologs across IMG/M’s assembled metagenomic data. It … and Nanohaloarchaea. This work represents an excellent showcase of the unique capabilities provided from the IMG/M …
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Webinar: MycoCosm Tutorial
… ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups are built? A: EcoGroups are built … and quantifications, and shipping. A: Absolutely! 12.  Q: Is it possible to use the Browse page tool to … annotation process (are these functional annotations) and how are these integrated within the platform? A: Please …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… mechanism to turn off shattering and domesticate crops.” How shattering occurs varies widely between crops, Kellogg … a gene associated with leaf angle, which determines how much sunlight leaves can get and in turn serves as a … and improve human health. So there’s a major question: how to turn a C3 crop into a C4 crop. There should be a …
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Streamlining Regulon Identification in Bacteria
… (Berkeley Lab). Transcription factors control when and how genes are turned on or off, so transcriptional … including activators, repressors and sigma factors. However, currently the process for identifying the … efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were able to identify the associated …
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DOE Metrics
… 179% 2,208 2,064 95.4% Q2 2026 175 243.806 139% 2,160 2,112 99.8% Q3 2026 175     2,164     Q4 2026 175     2,208     … 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 2,112 99.8% Q3 2025 175 309.533 177% 2,140 2,184 102.1% Q4 2025 … 650.0 870.574 134% 8,784 8,688 101.2% Q1 2024 162.5 197.381 121% 2,164 2,112 97.6% Q2 2024 162.5 143.644 88% 2,140 2,184 …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… mode’, where they do very little.  SIP experiments can show which species actively munch on a specific chemical … version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive … this to untangle which microbes ate the compound and how much they ate.  These analyses provide granular insight …
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Corals in Hot Water Get Help From Their Microbes
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