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Biodesign
…   The Joint Genome Institute's Biodesign Platform capabilities support researchers exploring how to convert sequence into functional assessments. This is done by synthesizing genes, … of tools to automate sequence design for assembly by Gibson, Yeast recombination and Golden Gate methods …
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Microbial Genomics & Metagenomics (MGM) Workshop
… Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … This means it contains more than two copies of the genome , which can have pronounced ecological and …
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Finding the Fermenters
… prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with … including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … organisms on the list. They also searched IMG/M for all protein-coding genes belonging to each genome. The final …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have … coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … how JGI data supports higher education in this JGIota , a Genome Insider podcast minisode.)  “The ultimate target has …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … Lake Mendota is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome Insider …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, … rust disease resistance works in sugarcane could help protect other crops facing similar pathogens. Summary Many …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field … and maximize the benefit to society. Inspired by the Human Genome Project (HGP), and building upon the principles for open access in the field of genomics … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 … Borevitz) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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Genome Sequences of 42 Bacteria Isolated from Sorghum bicolor Roots
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Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Annotation Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that …
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