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The Soil Blooms Green
… a microbial community that might be quietly improving the soil. Penn State researchers Mary Ann Bruns and Terry Bell …
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Publication Policy
… while also adhering to the authorship policies of the journal in which the research is published. The JGI expects … below) for the generation of sequence or metabolomic data, DNA synthesized, and any other contributions, such as … is done in a timely fashion. The publications resulting from such efforts should specify the collaborative nature of …
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Metagenomic reconstruction of nitrogen and carbon cycling pathways in forest soil: Influence of different hardwood tree species
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Cataloging the Microbes that Manage the Health of River Systems
… researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … and maintaining the health of these systems, these communities remain understudied. Through the JGI’s Community … The team also provided several access points for these datasets. As part of a larger microbiome data integration …
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An RNA ligase partner for the prokaryotic protein-only RNase P: insights into the functional diversity of RNase P from genome mining
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Webinar: SIP technologies at EMSL and JGI
… technologies available at JGI and EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with … Mass Spectrometry, NanoSIMS, and other techniques. Q&A from the Webinar: 1. Q(uestion): How much DNA is required … in the sample to start with. 2. Q: What would a typical turnaround time be for data once samples are in hand at JGI? …
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Transductomics: sequencing-based detection and analysis of transduced DNA in pure cultures and microbial communities
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Metatranscriptomics sheds light on the links between the functional traits of fungal guilds and ecological processes in forest soil ecosystems
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Insight into trade‐off between wood decay and parasitism from the genome of a fungal forest pathogen
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Fungal Friends or Foes in Plant Roots
… fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified … if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can thrive in … more about these other plant-fungal relationships, an international team led by graduate student Fantin Mesny in …
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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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Supercharging SIP in the Fungal Hyphosphere
… microorganisms live in complex communities, like within soils or the gut, they are difficult to study individually. … isotope to it. The isotopes are incorporated into the DNA of specific microbes who consume the labeled food or … effects of climate change. The team’s study used samples from the area immediately surrounding AMF’s long filaments, …
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