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… They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature Biotechnology  … created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. … for identifying viruses and plasmids. Until now, most other tools have focused on identifying only specific plasmids or …

… flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC … hardware and worked closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was … Data Collaborative where she leads infrastructure and user-centered design efforts. Dr. Fagnan was on the …

… Six new members have been elected to the User Executive Committee (UEC) of the U.S. Department of … also interested in developing or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and …

… and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis … metabolomics samples, and should generally conform to the guidelines for our  CSP Large Scale call .  Process … or metabolomics should apply to one of the JGI’s  calls for user proposals . …

… so starting from some of the enzymes that we had the most data on and knew the most about, working with my … off– JACKIE WINTER: No. ALISON NARAYAN: Often, they’re abbreviated too from alpha ketoglutarate to just AKGs. In my … with. DAN UDWARY: Yeah. ALISON NARAYAN: And there are other tools that I think are really useful, that again are set up …

… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). … the virus and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes distinguished research achievements that support open data practices, development of standards and processes for …