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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … (LANL), and DE-AC05-76RL01830 (PNNL). … BioScales project on JGI Genomes Online Database … BioScales project on National Microbiome Data Collective … …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The … anything. The collaborative consortium behind the GROWdb project demonstrates not only how researchers can … … Cataloging the Microbiome of U.S. Rivers … GROWdb pilot project … GROWdb public narrative … From our partners … From …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the … regions to the deep ocean, cold environments occupy more space on Earth than any other ecosystem. Therefore, … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions at … in support of JGI’s contributions to the Human Genome Project, he began developing larger comparative genomic … research 51 (16), 8383-8401. JT Lovell et al., 2022. GENESPACE tracks regions of interest and gene copy number …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. … we also worked in DIANs. We worked on that. We had separate projects with John Thorson and Ben Shen. [Listen here to Ben … there are micropredators. So our orientation in the cave project just now switching from intermicrobial interactions, …
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How Filamentous Fungi Sense Food
… of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining the activity, … a Joint Genome Institute Community Science Program grant (CSP 982), and funds from the Fred E. Dickinson Chair of Wood …
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JGI Announces 2023 Community Science Program Awardees
Congratulations to the proposers of the 19 proposals selected … very excited to start working with this years’ crop of CSP recipients, over half of which are first-time PIs on a … CSP Annual Call is focused on large-scale genomic science projects relevant to the DOE’s Office of Biological and …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … courses across the globe for insights into reproductive, space and genome biology . The undeniable power of plants, … to Z.-H.C.). B.A.A. and D.W.S. acknowledge funding for this project from the Ambrose Monell Foundation. … Ceratopteris …
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Scaling Up Existing Skill Sets
… opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer … anyone in the Institute to get feedback and insights on the project and everyone’s willingness to guide or mentor me … one that incorporates big data. A large part of my project this summer was utilizing a high performance cluster …
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Three Join the JGI User Executive Committee
… (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific Northwest National … in crops. He has been a PI or Co-PI on five user projects with the JGI, as well as served on review panels for the JGI Community Science Program (CSP) proposals. He  brings experience representative of the …
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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, … Our group also performs ‘proof-of principle’ research projects to demonstrate new genomic capabilities. Our group …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW …
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