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Fungus Fuels Tree Growth
Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel … studied what happens to the tree’s physical traits and gene expression when the fungus is present. The Impact Black … 01 to F. Martin), JGI Community sequencing program project (CSP570, DE-AC02-05CH11231), and National Science Foundation …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… interaction up close, using RNA sequencing to understand gene expression: one of the first cross-kingdom … to look at gene expression in both plant cells and fungal cells. Using a technique called single nuclei RNA …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… interaction up close, using RNA sequencing to understand gene expression: one of the first cross-kingdom … to look at gene expression in both plant cells and fungal cells. Using a technique called single nuclei RNA …
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Occurrence and expression of genes encoding methyl-compound production in rumen bacteria
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… at Lawrence Berkeley National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet … plant genome sequences also led researchers to identify a gene related to seed dispersal in wild populations for the … “To our knowledge, nobody has ever discovered a dispersal gene that way,” said Kellogg, a senior author of the paper. …
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Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass
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Yasuo Yoshikuni
… as an environmentally sustainable and cost-effective biomass for production of renewable fuels and chemicals.  … … University of Washington … Shen et al., Mitochondrial ATP generation is more proteome efficient than glycolysis., … characterization of a soil viral auxiliary metabolic gene product - a functional chitosanase., Nature …
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Environmental Genomics Group
Ladau, J. et al. (2019)  Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology . Trends Microbiol. …
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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Better Genome Editing for Bioenergy
The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help scientists engineer … these sgRNAs, cloning them alongside CRISPR-Cas9 into an expression vector to create an sgRNA plasmid library. The … work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW …
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A Complex Confection Decoded: Sugarcane Reference Genome
… in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to map the … partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference sequence of sugarcane … sugarcane into production factories for sugar and biomass. Additionally, the team was able to identify a major …
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Frequently Asked Questions: Project Management
… address, click the “Request email change” link. This will generate an email that will go to an administrator to … and have not been validated by the JGI, but are provided as general guidance. … Guidance on international shipments can … Microbial (IMG–ER) Metagenome and Single Cell (IMG/ M-ER) Fungal (Mycocosm) Algal (Phycocosm) … In general, data …
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