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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics … your Tree ever differ from NCBI Taxonomy? A(nswer): If you find that our trees are incorrect or need to be changed, … the resources for free. 8.  Q: What makes a successful project? A: Combination of: DOE mission relevance Science …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, … — but the experts we were able to work with on this project to ask questions about structure and function,” … of the new study, set out to tackle some of these genes, expressing and purifying the range of proteins these genes …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal … data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact … the fungal Tree of Life, including the 1000 Fungal Genomes Project, which aims to provide a reference genome for each …
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Special Initiatives & Programs
… Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, including awards funded through  BER Funding Opportunity … The JGI is inviting researchers using the U.S. Culture Collection Network … The JGI performs sequencing, metabolomics and synthesis on behalf of the U.S. …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On … possible given the finite staff available to the Phytozome project. What will happen to Phytozome v12 URLs after August … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
Learn more
Natural Prodcast Episode 12: Nadine Ziemert
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … miner and has been involved with the AntiSMASH and MIBiG projects. And I found her review in natural product reports … fast that I thought– DAN UDWARY: Yeah, there’s no selective pressure to keep them, right? NADINE ZIEMERT: Yes, and then …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the … of Bacteria and Archaea (GEBA) initiative. “This project has helped to define the current shape of the … of genomic DNA at DSMZ for GEBA-Actino and similar projects. …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … the genomic DNA for the binding sites.” The technology expresses the transcription factor proteins from a DNA … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … databases with large-scale transcriptome projects such as Expression Atlas and PPRD could help with understanding gene …
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining … Brandon Imstepf一were selected to continue their research projects through the DOE RENEW grant initiative when school …
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Natural Prodcast Episode 5: Brad Moore
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … in his science. And he was working with some really cool projects at that time. So I was pretty stoked to be able to … know, the goal is to get rid of them. So, you know, you expressed genes to make demoic acid, you can make a toxin. But …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences … from the JGI and EMSL in one proposed research project. In the same proposal, researchers can also request … JGI : For general questions, contact  Christa Pennacchio , Project Management Office. For questions about the …
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