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Biodesign
… DNA constructs:  Individually arrayed constructs, up to ~150 Kb in length  Pooled libraries such as sgRNA, promoter …
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Complete Genome of Oil-Rich Alga Reveals Ideal Platform for Bioengineering
… Streamlined genome with precise gene targeting transforms oil-producing alga into a powerful platform for developing … The Science Scientists have fully decoded the genome of an oil-producing green alga, and demonstrated precise gene … is remarkably simple with only 7,500 genes, compared to 17,000 in the model alga Chlamydomonas . The genome is also …
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Synthetic Biology Informatics Group
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Dealing with Drought: Uncovering Sorghum’s Secrets
… grass that adroitly handles droughts, floods and poor soils. This is the first paper that describes sorghum’s … researchers hope to improve yields for other crops under water-limited conditions. Summary In humans, traits such as … the crop and its microbiome. For three consecutive years (2016-2018), researchers conducted large-scale experiments in …
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Marine Microbe Contains Multitudes
… at different depths. But SAR324 can be found throughout the water column, from the warm, well-lit surface, to the … Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long … two main groups: two ecotypes dwell in the sunlit upper waters (above 200 m, or 656 ft), and have genes to support a …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… activity in microbiomes. The initial analysis used over 12,000 metagenomes from diverse environments and grouped … was used to take the complex, high-dimensional data (the 136 tetranucleotide frequencies for each of the 12,063 metagenomes) and reduce it into two axes (LDA …
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Crops as Tough as World Cup Turf
… to grow well in worse conditions: with more heat, less water and less fertilizer. Grasses do better in these …
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Understanding Wildfire Recovery, Starting in Soil
… A metagenomic look at the soil microbes present a year after a wildfire. The Science … burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process … a wildfire. The Impact Healthy forests store carbon, filter water, and support all kinds of plants and animals, but with …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… and environmental challenges. Viruses are everywhere — in soil, the sea and, of course, the cells of other organisms. … to boost understanding of environmental viruses. In 2016, Nikos Kyrpides at the JGI led a team that combed … can do. For example, understanding virus-host dynamics in soil microbiomes could allow for more accurate ecosystem …
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Examples: Successful LOIs & Submissions
… Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or core metabolic … Microbial contributions to soil carbon storage during simulated range shifts of … Characterization of simplified soil communities with high and low carbon use efficiency …
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A Grass Model to Help Improve Giant Miscanthus
… abilities to adapt to extreme environments such as poor soils and drought. The reference genome for M. sinensis, and … and Environmental Research under Award Number DE-SC0018420. The work conducted by the U.S. Department of Energy … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… or biological samples (like cell media or lake water) without doing a metabolite extraction? Or are these … proposal calls, projects can request up to 50 polar and 150 nonpolar metabolomics analyses. For the other calls, we … researchers worldwide.  Q:  To what extent is natural soil a limit to identify molecules exchanged between plants …
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