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A Collaboration to Improve Plant Genome Annotations Across Species
Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing it to fill gaps in the …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, … many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …
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Model Fern Reveals Insight into DNA Thievery in Ferns
Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and … to Z.-H.C.). B.A.A. and D.W.S. acknowledge funding for this project from the Ambrose Monell Foundation. … Ceratopteris …
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Matt Blow
Blow carried out postdoctoral work at LBNL, where he worked on computational and experimental approaches to study genome regulation in human and other vertebrate genomes. When he joined the JGI, he worked as a project scientist and then as a research scientist on …
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Data Ecosystem
… specifically optimized for high-performance computing environments. … KBase is a critical partner in enabling systems … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …
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Natural Prodcast Episode 5: Brad Moore
Prodcast,” a podcast about the science and scientists of secondary metabolism.  Brad Moore, UC San Diego and Scripps … in his science. And he was working with some really cool projects at that time. So I was pretty stoked to be able to … Sequencing Program, and they worked with us to sequence two genomes. Those were of Salinospora tropica and arenicola . …
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Finding the Fermenters
… prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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Natural Prodcast Episode 8: Eric Schmidt
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Hey there and welcome back for … so I’m hoping we can follow up with him again as the project progresses! If you’re interested in RiPPs, I’ll put … Eric was a postdoc, and Eric and I worked on the aflatoxin project together, which – we’ve already talked a little bit …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… … DAN UDWARY: Hey, everyone! Welcome to the “Self Promotion Episode” of Natural … DAN UDWARY: Nothing to be sorry about. Yeah, no, your project was really cool. The vanadium haloperoxidases are … organisms we’re finding– at least by looking at their full genomes — are really not like anything that’s been …
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Natural Prodcast Episode 4: Nancy Keller
Prodcast,” a podcast about the science and scientists of secondary metabolism.  DAN: Welcome back to Natural Prodcast! … so, so cheap to sequence. Right now, for our particular projects, we’re not doing that right now, but we might. I …   DAN: Got it.    NANCY: And this is really to complete the genomes, and I’m really thankful for this. It sort of goes …
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Examples: Successful LOIs & Submissions
Program Large-Scale Call, as well as successful submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared …
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A Complex Confection Decoded: Sugarcane Reference Genome
… work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar … of Experimental Botany (IEB) was supported by the ERDF project “Plants as a Tool for Sustainable Global …
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