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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came … effective in achieving higher quality results compared to smaller individual efforts. This is also the type of …
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Natural Prodcast Episode 15: Katherine Duncan
Hey, Alison Takemura: Hey, Dan. Dan Udwary: Today we’re going to talk to Kate Duncan. And Kate is– I should ask, you … around countries. And I was actually in Croatia on a small island off the coast in the Adriatic Sea, and I … And you kind of build your knowledge from the things, the small pieces that you know, to expand that out. And then you …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have … that are still vital to facilitate the assembly of small DNA fragments into larger and coherent pieces called … by many, many scientists.”  Using samples of rumen-digested switchgrass, researchers isolated and sequenced DNA from …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Survey of Setaria's natural diversity reveals seed dispersal in wild populations for the first time. For years, Elizabeth … pulling over to the side of the road to collect small weedy plants and bring them back to the lab. The weedy … as are the candidate biofuel feedstocks Miscanthus and switchgrass.  Innumerable road trips and hundreds of plants …
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology … Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and … assign functional “read out” to sequence data. Moving from cataloging microbial diversity to experimental …
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Promoter elements associated with RNA Pol II stalling in the Drosophila embryo
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … will make the right cut, researchers created a set of guide RNAs that were effective against 94 percent of the genes in … yeast. The Impact The team used this set of guide RNAs on  Yarrowia lipolytica to identify essential genes and …
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10 From JGI on the 2019 Highly Cited Researchers List
… their 2019 list of Highly Cited Researchers , which includes 10 affiliated with the JGI . The 2019 list focused on Highly Cited Papers, defined in the Methodology section as “those that rank in the … Kerrie Barry and Jeremy Schmutz worked with a community of switchgrass researchers to conduct a large-scale field …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… planet’s microbial diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the … collaborated with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … inviting the research community to discuss how to move from cataloging microbial diversity to experimental …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The Science Changing an A, C, T or G in a genome … unwrapping complex mechanisms of genome-wide regulation and cataloging them in JGI’s fungal portal MycoCosm. … The work …
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