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David Goodstein
… before joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of human gene … Genome Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research efforts … group also develops and maintains the Phytozome Plant Genomics web portal. … BS in Physics, New York University, …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… previous study conducted by our research team surveying the genomic and phenotypic diversity across the natural range of … climate resilient switchgrass for bioenergy production. Building on the framework provided by our new switchgrass … use existing data as well as generating additional genomic resources to address long-standing evolutionary ecological …
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A One-Stop Shop for Analyzing Algal Genomes
… greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users … sequence and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan … including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, …
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Mindfully Moving JGI
By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years after the JGI united the genomics expertise of three national labs in one long … and sustainability. But it’s also so we’re not wasting Lab resources.” During these cleanout days, multiple speedpaks …
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You Can Move, But You Can’t Hide
Berkeley National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user facility at … cycles around them. By understanding more about the genomics of MGEs and their evolution at the cellular level, … The tool was employed to build version 4 of the JGI’s  IMG Virus Resource (IMG/VR) , now with more than 15 million …
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The integrated microbial genomes system: an expanding comparative analysis resource
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A High-Quality Genome Resource for the Oak Wilt Pathogen Bretziella fagacearum
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The Joint Genome Institute Offers Resources Beyond a Core Facility
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Neha Varghese
… software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides … and implementation of microservices in conjunction with the IMG platform. …
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The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism
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Parallel Evolution of Nacre Building Gene Sets in Molluscs
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CSP New Investigator Call
… any questions prior to proposal submission.   … Additional Resources …
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