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Simon Roux
… the development of novel computational tools to identify virus sequences, the design of new experimental approaches to … with JGI users for analyzing viral datasets, and the organization of community-building efforts in the field of … 12, 3076. Roux et al., 2018. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … of terrestrial biogeochemical cycling and inter-organismal interactions. These insights are crucial for … The Microbial Program focuses on using advanced sequencing technologies to explore …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) … The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their science including technical capabilities …
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Functional Characterization of Two Class II Diterpene Synthases Indicates Additional Specialized Diterpenoid Pathways in Maize (Zea mays)
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of … living creatures for energy, growth and reproduction—most organisms produce a set of "secondary metabolites," chemical … produced by groups of genes known as biosynthetic gene clusters (BGCs.) As reported in the recent Database issue of …
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UC Merced Interns Reflect on Their JGI Summer Projects
… wide — from implementing new data visualization tools, to using natural language processing techniques to categorize genetic information. Learn more about their work here in a series of videos produced by JGI … Intern: Brendan Blasius (undergraduate) Mentor: Guohong "Albert" Wu Click the …
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JGI Announces 2026 New Investigator Portfolio
… Emily G. Aguirre, Shauna M. Bennett, Laura Bogar, Michael Borg, Rory Craig, Nicholas Darci-Maher, Lital Davidi, Colleen … Sherbo, Jennifer E. Smith, Chin Chin Too, Brooke Weigel, Susanne Wilken, Jing Yuan, and Brittany N. Zepernick.    Each … the October 2026 review. You can also find more information about the JGI’s  various proposal calls here. …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive … genome sequencing, or only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and the microbial world but … Investigator of the corresponding genome projects as they may coordinate users in the community annotation process for …
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Hyperdiverse, bioactive, and interaction-specific metabolites produced only in co-culture suggest diverse competitors may fuel secondary metabolism of xylarialean fungi.
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A More Intuitive Phytozome Interface
… interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … of Phytozome accessible as an interactive website. Since May 2019, v12 has not had any additional genomes added to … v13. Below are some answers to Frequently Asked Questions about the transition from Phytozome v12 to v13. Why is it …
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JGI Announces 2025 New Investigator Portfolio
… novel research projects from PIs who have not led any previously accepted proposals.  The New Investigator call , part of our  Community Science Program , allows us to work and share our tools with a widening circle of … November 2025 review. You can also find more information about the JGI’s  various proposal calls here. …
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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … well as gaining insights into potential applications they may have in a wide range of research fields. A public … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode …
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