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Dissecting the complex regulation of pentose utilization in Aspergillus niger
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JGI@25: Using Team Science to Build Communities Around Data
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the … Plant Program, including genomes that are both large and complex. The first publication of a genome generated by the …
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Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … Institute for Agricultural Research (INRAE) to sequence a reference genome for the fungus Phakopsora pachyrhizi , a … of bioinformatics.”  P. pachyrhizi has a very large and complex genome with lots of repetitions, making it very …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) … After an LOI is accepted, the researcher then submits a proposal … Shining a Light: Advanced Photon Source Capabilities for FICUS …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could … leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural … Episode Transcript … This the second episode of Natural Prodcast, which continues a conversation from the first …
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The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes
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Constructing a yeast to express the largest cellulosome complex on the cell surface
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Natural Prodcast Episode 21: Elizabeth Parkinson
… DAN: All right. Welcome back to Natural Prodcast. I did it. … exposure to working with Streptomyces, learning more about genome mining, as well as isolation and a little bit of … is difficult. And that just add a whole other level of complexity and-- BETSY PARKINSON: I guess the other thing …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of … methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … he’s interested in expanding the diversity of the reference database he’s developing called the  Microbial …
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Multiple whole-genome alignments without a reference organism
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