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When “The Blob” Made It Hotter Under the Water
… drive the biological pump that takes carbon from the atmosphere and keeps it in the deep ocean. With genomic samples … began forming in Alaska. Over the next two years it slowly spread, raising water temperatures by a few degrees. … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint …
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An Addiction Crucial to a Fungus’ Reproduction
… Burkholderia , is recognized as a mutualist, where both species of organism benefit from association, but was … interaction with their soil fungus host, Rhizopus microsporus . Researchers found that endobacteria establishing … with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as …
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Introducing New Members of the JGI User Executive Committee
… The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and …
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JGI@25: From Life at the Extremes to Editing Genomes
… to seven. Doudna was recognized for her work on CRISPR-Cas9, technology described by the Nobel Foundation as … impact on the life sciences.” Building upon CRISPR-Cas9 work, the Doudna lab at UC Berkeley seeks other … CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her …
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Defining a Pan-Genome for Antarctic Archaea
… Impact By collecting and sequencing dominant haloarchaeal sequences from six hypersaline lakes, researchers focused on … been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his team compared two strains of Halorubrum lacusprofundi from Deep Lake and Rauer 1 Lake, one of the lakes …
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JGI Announces 2026 New Investigator Portfolio
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… is not representative of the diversity in the population, especially here in California. The opportunity to tap into … Ridge National Laboratory where he will be working on the Spruce and Peatland Responses Under Climatic and Environmental Change (SPRUCE) …
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SPRUCE-ing Up Science
… research related to how bacteria that colonize the roots of sphagnum work to transfer their thermotolerance abilities. … sink environments can continue to hold onto their carbon despite global warming.  At ORNL, Lawrence brings a … north, in U.S.-based places like Minnesota for example, despite taking up only about 3% of the planet’s landmass, peat …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target … in bacteria there is only one type of RNA polymerase responsible for each gene. These bacterial RNA polymerases are … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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Gene Expression: From On-Off Switch to Dial
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Gut Fungi: Unexpected Source of Novel Chemicals
… . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this group is … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint … scientists Ben Bowen and Katherine Louie conducted mass spectrometry experiments (or analyses) to break up the …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… machinery toward chemical production — a coordinated response that had never been mapped in this detail before.     … to design more efficient microbial factories. Identifying specific genes, regulatory elements and metabolic pathways … The team also identified previously unknown promoter sequences within these gene clusters, offering new …
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