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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate change … drive the biological pump that takes carbon from the atmosphere and keeps it in the deep ocean. With genomic samples … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its … Burkholderia , is recognized as a mutualist, where both species of organism benefit from association, but was … with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as …
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Introducing New Members of the JGI User Executive Committee
… JGI users already serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons for … The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … to seven. Doudna was recognized for her work on CRISPR-Cas9, technology described by the Nobel Foundation as … CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of … Impact By collecting and sequencing dominant haloarchaeal sequences from six hypersaline lakes, researchers focused on … been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his team compared two strains of …
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JGI Announces 2026 New Investigator Portfolio
… Pictured from left: [Top row]: Emily G. Aguirre, Shauna M. Bennett, Laura … Lital Davidi, Colleen J. Doherty, Adrian A. Estrada-Graf, Nicole M. Fernandez; [Row 2]: Zachary Garvin, Chandan Kumar Gautam, …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. … This work was supported by the U.S. Department of Energy Office of Science under Contract No. …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … Science Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi … is not representative of the diversity in the population, especially here in California. The opportunity to tap into …
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SPRUCE-ing Up Science
… A former JGI intern is now applying his internship lessons on … his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … research related to how bacteria that colonize the roots of sphagnum work to transfer their thermotolerance abilities. …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science Scientists have … approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the … This work was funded by the Air Force Office of Scientific Research under …
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Gut Fungi: Unexpected Source of Novel Chemicals
… Fungi from herbivore poop make surprisingly complex … . Yet, combing through the genomes of four anaerobic fungal species has revealed, for the first time, that this group is … finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users requiring multiple omics methods to … machinery toward chemical production — a coordinated response that had never been mapped in this detail before.     … The team also identified previously unknown promoter sequences within these gene clusters, offering new …
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