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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … method can be  accessed here so that, Session said, other scientists can “follow a step-by-step process to apply it to …
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An Earth Month Look at Sustainability Efforts at the JGI
… Sustainable Berkeley Lab maintains a  calendar of Earth Month events throughout April. This year, a new group at the … Plant Sale. All year, the JGI helps support finding solutions to clean energy and environmental challenges. And many … services,” Fulton said. These emissions come from the whole lifecycle of materials used — from their creation to their …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory (EMSL) co-hosted a … provide scholarships or financial support, but they provide scientists with accepted proposals free access to their … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … learning models that predict biological traits from DNA sequences. The study also confirmed that mitochondrial and …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have … used metagenomics — a then-novel approach which allows scientists to study microorganisms that can’t be cultured by … of rumen-digested switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect … faculty member as PI? A(nswer: The FICUS program is open to scientists at international institutes.  Applicants do not … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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New and Improved: Eucalyptus Reference is Now Accessible
… assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference … published in 2014 by a team led by University of Pretoria scientists with help from researchers at the DOE Joint … using advanced technologies to reconstruct the complete sequences of individual chromosomes. The team describes the …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… other traits when migrating back to the ocean. The Science Scientists have discovered flagella in an unexpected place: … other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The Impact Chloroflexota are bacteria …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As … stressors, um, alter microbial biomass and then what the consequences are for the ecosystem. ALISON:  So, Ed is trying … 2 billion people on the planet, to you know, within my lifetime, we should hit around nine or 10, which is thought …
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Tracing the Evolution of Shiitake Mushrooms
… genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… Scientists have discovered that the candidate bioenergy … at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the … , which can have pronounced ecological and evolutionary consequences. A previous study conducted by our research team …
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An Addiction Crucial to a Fungus’ Reproduction
… A fungus relies on bacteria to regulate key components of its reproductive … with the fungi and bacteria, while the DOE JGI team sequenced and annotated a host genome (Rm ATCC 52813) as … is highly dependent on the Burkholderia endobacteria to proliferate both sexually and asexually. This dependence is …
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