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ARBitrator: a software pipeline for on-demand retrieval of auto-curated nifH sequences from GenBank
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Rapid Quantification of Mutant Fitness in Diverse Bacteria by Sequencing Randomly Bar-Coded Transposons
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MjCyc: Rediscovering the pathway-genome landscape of the first sequenced archaeon, Methanocaldococcus (Methanococcus) jannaschii
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Integrating Experimentation with Data
… The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities … analytical characterization, imaging, and visualization, through a collaborative, peer-reviewed proposal … Click to view a downloadable copy of the sponsor prospectus …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the 730-megabase Sorghum bicolor (L.) …
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What Happens Underground Influences Global Nutrient Cycles
… EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … omics and computational resources with JGI’s cutting-edge genomics, DNA synthesis and complementary capabilities. …
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Effects of sample treatments on genome recovery via single-cell genomics
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working … the goal of inspiring students to embark on a career in genomics and to help foster a diverse future workforce in … during their internship, check out their stories, told through print narratives, videos, a podcast episode, and …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… inviting researchers to apply for access to multiple genomics and molecular characterization capabilities in just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS … single cell capabilities range from traditional single cell sequencing and mini-metagenomics to more targeted …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” … The machine “learned” to identify data generated in part through the 1000 Fungal Genomes Project, including 55 … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing
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