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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
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Cataloging the Microbes that Manage the Health of River Systems
… program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established … and Environmental Research (BER) grants DE-SC0023084, DE-SC0021350, and DE-AC02-05CH11231. Partial support by US National Science Foundation awards DEB1840243, EAR1836768 and DEB1457794. Funding support also was …
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Game On: High School Students Drive Everglades Metagenomics Study
… made coring devices, then planned and collected from 4 sites with 5 replicates. They extracted the DNA from the … samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed the soil samples, the JGI offered 7 … and Proteobacteria to be the most common phyla of bacteria sequenced from the metagenomic soil samples from the four …
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The JGI Data Portal: Improving User Experience
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and …
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New Research Sheds Light on Diversity in the Deep Sea
… and the University of Wisconsin-Madison collected 40 samples from five oceanic regions to better understand … US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and DBI-2047598 to …
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Tracking the Origins of Methane-Producing Microbes
… the microbes into small pools of cells that were then sequenced separately. From these samples, 111 …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
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iPHoP: A Matchmaker for Phages and their Hosts
… kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program … of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is …
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Kjiersten Fagnan
… into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a … enabling microbiome science. Nat Rev Microbiol 18, 313–314 (2020). https://doi.org/10.1038/s41579-020-0377-0 S. Pau and J.B. Bell and A.S. Almgren and …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… and its applications. “I moved to UC Davis in 2014,” recalled Philipp Zerbe of the University of California, … at how different bioenergy relevant plants can produce species-specific blends of terpenoids, naturally occurring … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the …
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