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Supercharging SIP in the Fungal Hyphosphere
The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … communities, with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope … effects of climate change. The team’s study used samples from the area immediately surrounding AMF’s long filaments, …
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Extracting the Secrets of Secondary Metabolites
… survival, may now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and … in overcoming this obstacle when it hit the scene in 2019. Now, that power is poised to grow exponentially by … CRAGE allows for the transplanting of these BGCs from one organism into an alternate host via a landing pad …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … the common bean’s nutritional value, providing anywhere from 10-30% of daily protein requirements. It is also an …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
All Berkeley Lab Employees and Affiliates. When: August 29th, 3:00 pm – 5:30 pm 3:00 pm – 4:15 pm: Panel discussion, … Director, DOE Joint Genome Institute Read a synthesis from the panel discussion  here . Contact  Robin Johnston for followup questions.     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … changing planet. In this short audio production, we’ll hear from Ed Hall, an ecologist at Colorado State University in … coupled to microbiome science. I mean, I’m really, it’s not hyperbole, I think like it’s, it’s this unique time where …
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … and other microorganisms that live there.  Researchers from Portland State University and the University of … funded by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … miles and eight states. In 2021, using switchgrass samples from these gardens, a team led by researchers at the …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… laboratory ecosystems to help transition microbiome science from largely observational to reproducible mechanistic … studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for … the future of microbiome science. Organizers The EcoFAB 2025 Conference is organized by the EcoFAB Steering …
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Enlarging Windows into Understanding Gene Functions
… in sequences affect traits. In a text file, the rows of letters A, T, C and G appearing over and over in a … Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first … The technology expresses the transcription factor proteins from a DNA template amplified directly from either genomic …
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The JGI announces 2024 awardees for our Community Science Program annual call
From left to right: [above] Olivia Ahern, Adriana Corales, … excited to announce the fifteen scientists selected for our 2024 Community Science Program Annual Call. “It’s exciting to see the diverse portfolio of successful CSP proposals this year,” noted Tanja Woyke, …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … California (UC), Merced assistant professor Suzanne Sindi from the School of Natural Sciences and started a program …
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Streamlining Regulon Identification in Bacteria
… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … efficacy of RIViT-seq, researchers recently characterized 12 sigma factors and were able to identify the associated … the third is determining the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given …
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