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You Can Move, But You Can’t Hide
MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the direction of Microbiome Data … (Berkeley Lab), with computing resources provided by NERSC, another user facility at Berkeley Lab. geNomad is …
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The JGI announces 2024 awardees for our Community Science Program annual call
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
Systematics for the triennium 2017-2020! Established by the University of Queensland in 1986, the van Niel Prize …
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Streamlining Regulon Identification in Bacteria
Regulons are a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of regulon identification by in vitro transcription-sequencing (RIViT-seq) to … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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JGI Announces 2025 New Investigator Portfolio
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads … genetic diversity.  In 2021, he was among those selected by the DOE Office of Science as part of the Early Career …
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Toward More Efficient Artificial Photosynthesis
… to convert them into energy that is then stored. A team led by researchers at the Max Planck Institute (MPI) for … Summary In the  May 8, 2020 issue of  Science , a team led by Tobias Erb, director of the MPI for Terrestrial … bioproducts. Global temperatures have been rising caused by high levels of carbon dioxide in the atmosphere. The work …
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Introducing New Members of the JGI User Executive Committee
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Gene Expression: From On-Off Switch to Dial
… on, scientists can determine the level of gene expression by the gradations. The Impact Metabolic engineering could … characteristics in an organism. The experiment was led by Hal Alper, professor and associate chair at the … These results show that this singular library synthesized by JGI was versatile enough for use in multiple …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… and environmental remediation—all priorities identified by the DOE Office of Biological and Environmental Research … might contribute to the emergence of new pathogens. “ By sharing our vision broadly across Berkeley Lab, with …
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How Maize Makes An Antibiotic Cocktail
… are produced in every corn variety and protect maize by fending off fungal and microbial infections. Scientists … But zealexins are almost completely limited to maize. By deciphering the zealexin synthesis pathway, this study … to home in on precise biosynthetic enzymes elicited by fungal infection. They analyzed differences among mutant …
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Extracting the Secrets of Secondary Metabolites
… in 2019. Now, that power is poised to grow exponentially by combining it with CRISPR.  By employing CRAGE, researchers are no longer limited to … luminescens proves fatal to insects. It is carried by an infectious nematode and releases toxins into the …
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