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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… adapted to acquire carbon efficiently and convert it to usable organic compounds. However, no microbe works alone. … very different parts of the world: Crystal Geyser, Utah, USA, and Horonobe Underground Research Laboratory, Hokkaido, … systems target infectious agents like viruses and plasmids. First,  Ca . Altiarchaeum had CRISPR-Cas systems targeting  …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… [Pictured from left to right are: [Above] Sara Branco, Asdrubal Burgos, Posy Busby, Hao Chen, Jay … Community Science Program Large Scale call. This portfolio accelerates bioenergy innovation through genomic discovery … the research consortium aims to generate over a terabase of sequence. “We are thrilled to support this year’s CSP …
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Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites
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Metabolic Potential for Reductive Acetogenesis and a Novel Energy-Converting [NiFe] Hydrogenase in Bathyarchaeia From Termite Guts – A Genome-Centric Analysis
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Acute Limonene Toxicity in Escherichia coli Is Caused by Limonene Hydroperoxide and Alleviated by a Point Mutation in Alkyl Hydroperoxidase AhpC
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Systems-wide analysis revealed shared and unique responses to moderate and acute high temperatures in the green alga Chlamydomonas reinhardtii
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint … with a view to developing a deeper understanding of sequence-based gene function. … 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool for targeted and genome-scale gRNA design and sequence extraction for prokaryotes and eukaryotes. …
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Comparative genomic analysis of the gut bacterium Bifidobacterium longum reveals loci susceptible to deletion during pure culture growth
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Streamlining Regulon Identification in Bacteria
… are a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated the … which Mouncey leads. RIViT-seq is a three-step process. The first step is the in vitro transcription assay. The second … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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JGI Launches Latest Strategic Plan
… over one “petabase” – a quadrillion nucleotide bases of DNA sequence to the public data repositories over its now … Science , the culmination of an eight-month intensive conversation, writing, and incubation process. “JGI’s ‘vision’ is … Mouncey. “In this way, we can be more responsive to cross-cutting opportunities, align goals across the Area and …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… mentor Atif Shahab Edward Lu and mentor Miguel Romero Sean Saki and mentors  Zhong Wang and Bryce Foster Sivagunalan … I’ve been really focused with academia. And so this was the first time I was introduced into what a government lab and … because I am a math person, I got to see kind of for the first time how people do science on both a macro and micro …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… publication in Molecular Biology and Evolution . “It’s my first publication and it feels so rewarding,” Wint said. For … into why fungi have been so evolutionary and ecologically successful,” Wint said. “Fungi play an important role in the … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …
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