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JGI Contributes Eight to 2023 Highly Cited Researchers list
Congratulations to the 2023 Highly Cited Researchers from the JGI recognized … Those from the JGI whose publications rank in the top 1% by citations for field and publication year are: Igor … elements based upon their gene content and their genetic sequences. Roux was first author on a study featuring a new …
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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Triggering Morel Fruiting
Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is triggered … part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In … M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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CSP Functional Genomics
The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to help them translate genomic information into biological …
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Bioinformatic analysis of the distribution of inorganic carbon transporters and prospective targets for bioengineering to increase Ci uptake by cyanobacteria
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Cultivating Symbiotic Antarctic Microbes
… employed multiple microbiology and ‘omics techniques to experimentally determine that Nanohaloarchaeota are … in understanding the genomic basis and ecological consequences of microbe-microbe interactions. Using metagenomes … Joint Genome Institute (JGI), a DOE Office of Science User Facility, experimentally demonstrated that Nanohaloarchaeota …
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Building Sphagnum Genomic Resources
… (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on … impact on global carbon cycling and climate is estimated to be larger than any other single plant genus. Peatlands … is an unassuming plant, but it thrives in nutrient-poor, acidic and waterlogged environments, occupying every …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the … DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National Laboratory, … collection of UViGs by identifying contiguous viral sequences (“contigs”) from thousands of ecologically diverse …
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When “The Blob” Made It Hotter Under the Water
… of microbial communities in the northeastern subarctic Pacific Ocean. The Impact The microbial communities in the … marine microbes and by extension, the ocean’s capacity to act as a carbon sink. Summary As global temperatures … samples. Genomic DNA extracted from the water samples were sequenced by the U.S. Department of Energy (DOE) Joint …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  microbes , scientists … Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, is … Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s …
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Cataloging the Microbes that Manage the Health of River Systems
United States. They also provided multiple access points to the information. The team harnessed a community-science … WHONDRS, a community science river sampling program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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