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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … and 2010. DNA was extracted from the samples that were sequenced by the U.S. Department of Energy (DOE) Joint … at the NRAP site. However, the microbial strain’s genome sequence was not in IMG/M when the NRAP samples were …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San … a list of talks relevant to JGI science at PAG XXVII. On January 14, JGI Plant Program head Jeremy Schmutz and  … integrative biology. Researchers who are applying genomic sequence information to BER-funded activities of plant …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI … A:  When a proposal is submitted to the JGI, JGI scientists will go over the whole proposal for the technical … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the …
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with … is a long and laborious process — as well as a key way scientists study microorganisms. Because microorganisms live …
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Ian Blaby
… Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead … with a view to developing a deeper understanding of sequence-based gene function. …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At … kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … described in Plos Biology , the research team led by scientists at the U.S. Department of Energy Joint Genome …
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JGI Launches Latest Strategic Plan
… Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion nucleotide bases of DNA sequence to the public data repositories over its now …
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Making a Lichen Together
… clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s genomes and compared … them to close relatives who don’t engage in the lichen lifestyle. The team’s results appear in  BMC Genomics . To …
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Triggering Morel Fruiting
… in China and involving Francis Martin from the Institut National de la Recherche Agronomique (INRA) in France and Igor … system which allows the black morel to complete its lifecycle in an artificial environment. It is particularly … M. importuna CCBAS932 from the forests of France, were sequenced and annotated by a collaborative team. The genome …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … therefore play a critical role in the global carbon cycle, and are of significant interest for their … of a microbial community out in its natural environment, scientists have shown at least two microorganisms from …
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Promoting the Power of Viral Metagenomics
… early 2020, people all over the world have been forced to confront the awesome power that viruses have to affect nearly … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor … authors think this might have to do with the differences in lifestyle: honey bees need ample sugar to make honey that … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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