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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … said. Informed by other community-driven standards from the Genomic Standards Consortium, Wilhelm and Simpson assembled … SIP experiments. “I’m looking forward to seeing that come through, predicated on these data standardization efforts — …
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus
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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… spotlighted the metabolomic analysis capability available through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of primary and secondary metabolites from plants, … analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … microbiomes. Scientists conducted a shotgun metagenomic survey on three types of conifers–limber pine, … by both local conditions and the movement of microbes through forest canopies.  The Impact This work, enabled in …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel … The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial … at a larger scale through downstream DNA purification and sequencing steps. Ultimately, researchers found their …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… degradation.  “We are  very excited to see the outcome of the innovative research  being proposed by this year’s … CSP investigators,” said Tanja Woyke, Deputy Director of JGI’s User Programs. “Many of these projects are large in … awardee.  The CSP Annual call is focused on large-scale genomic science projects relevant to the DOE’s Office of …
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Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
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Purifying the Impure: Sequencing Metagenomes and Metatranscriptomes from Complex Animal-associated Samples
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Whole-Genome Sequencing Identifies a Rice Grain Shape Mutant, gs9–1
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