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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … their base are microscopic, photosynthetic algae. But human-induced climate change , a new study suggests, is displacing … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data contextualization The Science Since its launch 25 years ago, the  Genomes OnLine Database has matured from six projects on a spreadsheet … U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science Scientists have developed a more nuanced library approach to tuning gene expression in metabolic pathways. Compared to the … Foundation, and the JGI Synthesis Program under FP00005685. In addition, M.D. acknowledges funding from a National …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… This single environmental trigger highlights efficiency for users … The team also identified previously unknown promoter sequences within these gene clusters, offering new … chemicals and materials that strengthen domestic supply chains and industrial competitiveness. …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are interested … Impact By collecting and sequencing dominant haloarchaeal sequences from six hypersaline lakes, researchers focused on …
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Tanja Woyke Awarded van Niel International Prize for Studies in Bacterial Systematics
… to Tanja Woyke, who has been awarded the van Niel International Prize for Studies in Bacterial Systematics for the triennium 2017-2020! Established by the University of Queensland in 1986, the van Niel Prize recognizes contribution of …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … work and how healthy they are, a recent data set  outlined in  Scientific Data connects molecular features to large … ) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The … that can be turned on or off by the same regulatory protein. Researchers demonstrated the efficacy and potential of … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … Nayfach and  Nikos Kyrpides , was  recently published in the journal  Annual Review of Biomedical Data Science . … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, … This work was conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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