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A genomic perspective on fungal diversity and evolution
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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A chromosome-level genome assembly of the varied leaved jewelflower, Streptanthus diversifolius, reveals a recent whole genome duplication
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JGI Contributes Nine to 2022 Highly Cited Researchers List
… The study was featured on the  New York Times 2022 List of Firsts as well as other year-end science discovery lists.  … the JGI is sequencing thousands of bacterial and archaeal genomes from diverse branches of the Tree of Life.  Its … Nikos Kyrpides  and Simon Roux — features 600 genome sequences for Actinobacteria.  Woyke  was also one of three …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required … for researchers in this area. “Surprisingly, this was the first workshop of its kind on SIP metagenomics,” Malmstrom …
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A Plant Root Atlas for Tracking Developmental Trajectories
… scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … capabilities for DOE mission questions. One of the  first papers ever applying single-transcriptomics to plant … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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2022 Progress Report
… Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems … The vision of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … (Berkeley Lab), is to become the leading integrative genome science user facility enabling researchers to solve …
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JGI@25: Building a Better Bean
… of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That work was published online … The team sequenced and assembled a 473-million basepair genome of the common bean, identifying genes related to …
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The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… RNA sequencing to understand gene expression: one of the first cross-kingdom spatially-resolved transcriptomics … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … survive in those environments,”  Karen Serrano said. She is first author of this paper and a graduate researcher at the …
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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Transposon Mutagenesis Paired with Deep Sequencing of Caulobacter crescentus under Uranium Stress Reveals Genes Essential for Detoxification and Stress Tolerance
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