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… and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes of giant … genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to make inferences about the biogeographic …

… as Sudden Oak Death or by its acronym, SOD. Of the dozens of Phytophthora species, the most globally-recognizable … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop … … Publication: Tyler BM et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of …

…   Visualizing a novel, candidate viral genome found in the deep … at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … resist foreign genetic elements by incorporating short sequences from infecting viruses and phages. In these …

… under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and characterizing the planet’s microbial diversity is key to … of metagenome-assembled genomes (MAGs) directly from sequenced environmental samples without needing to cultivate …

Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes … 100  Dothideomycetes genomes, just enough of a sample size to test if a computer algorithm could distinguish between …

… in the collection, Genomics-enabled analysis of specialized metabolism in bioenergy crops: current progress and … terpenes. Terpenes are made via a tangled network of enzymes in plants. To better pinpoint the biosynthetic routes that produce terpenes, the JGI synthesized several of the underlying genes. These genes then …

… a genome has been compared to putting together a puzzle without necessarily knowing the final image. In … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …

… with warm-adapted ones, a trend that threatens to destabilize the delicate marine food web and change the oceans as we … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … After isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the …

Among the recipients of the latest SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at the UC Merced School of … engineered environments contribute to greenhouse gases,” Kaze said. “It’s an exciting time in the field of genomics and …

… expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …