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Complete Genome Sequence of Sulfolobus solfataricus Strain 98/2 and Evolved Derivatives
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Genome Sequencing Suggests Diverse Secondary Metabolism in Coral-Associated Aquimarina megaterium
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Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti
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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… Interns contributed to a number of projects, from refining … Wang Project:  Embeddings Based Clustering of Biosynthetic Gene Cluster for Novel Natural Product Discovery Kayla Kelly … and Identification of Mitochondrial Plasmids from DNA Sequence Moitrish Majumdar Mentors: Bikash Shrestha, Crysten …
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JGI Workshops at PAG
… Jan. 12 workshop: The Rapidly Expanding Genomics of Algae   With advances in genomics … the length and breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, … biology and hear from researchers who are applying genomic sequence information to BER funded activities of plant …
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An Automated Tool for Assessing Virus Data Quality
… CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps … The work was led by research scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey … Universität zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling … by neighboring cells in these processes.   One of the study’s co-authors is  Benjamin Cole , a research scientist …
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Bioenergy sorghum stem density increases threefold following internode elongation due to continued accumulation of lignified cell walls and complex regulation of genes involved in cell wall biosynthesis
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back at the JGI’s … so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many more meetings and … on, from the myriad of omics analyses for understanding gene expression in plants and the environment, to the JGI’s …
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