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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with … work to create FAIR datasets to maximize returns on these advances. Over the last two decades, Stable Isotope … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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JGI User Executive Committee Expands
… of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … Center, Sundy Maurice of the University of Oslo, Aaron Robinson of Los Alamos National Laboratory, Rebecca Smith … and capabilities that affect users. Robinson is a staff scientist at Los Alamos National Laboratory. With a …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a … Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231 within the framework of the …
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Leo Baumgart
… San Diego. As the Sequencing Technology Implementation Lead, he directs a multidisciplinary team responsible for piloting and operationalizing new genomic technologies, integrating automated … training in bioinformatics, Lawrence Berkeley National Lab … and Viola Willemsen. "Two deeply conserved non-coding sequences control PLETHORA1/2 expression and coordinate …
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Four Researchers Join JGI User Executive Committee
… of Energy user facility located at Lawrence Berkeley National Laboratory. Holly Bik of the University of Georgia, … of the JGI annual user meeting and New Lineages of Life symposia. Bik is a recipient of the Community Science … the UEC, Bik aims to serve as an advocate for early-career scientists and unconventional sample types such as …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … proteins in the samples were then isolated and sequenced by scientists at the Environmental Molecular Sciences …
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Three Join the JGI User Executive Committee
… (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … to view the full roster of members. Couvilion is a staff scientist at PNNL and thrust lead on PNNL’s Soil Microbiome …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers to … in their proposal as long as they’re staying under the sequence cap? A(nswer): Proposals that are looking at …
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Metabolic Potential for Reductive Acetogenesis and a Novel Energy-Converting [NiFe] Hydrogenase in Bathyarchaeia From Termite Guts – A Genome-Centric Analysis
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