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An Integrated Dataset to Understand Ecosystem Interaction
… features to large ecosystem-level processes for the first time. By collecting data from 27 different poplar ( … the tree’s production as a biofuel feedstock. Public accessibility to the data made available through this … that contribute to a sustainable bioeconomy. Summary The 27 samples studied by researchers came from two environments: …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Building Sphagnum Genomic Resources
… to be larger than any other single plant genus. Peatlands accumulate partially decomposed matter, and researchers … the CSP, researchers are aiming to have two high quality reference genomes for peat-forming species that occupy … novel species of Acidobacteria through an approved CSP proposal. The researchers found that these species encode a …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… Nikos Kyrpides (Biology and Biochemistry) Dan Rokhsar (Cross-field) Simon Roux (Biology and Biochemistry, … elements based upon their gene content and their genetic sequences. Roux was first author on a study featuring a new program called iPHoP …
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Plant Microbial Interactions Group
… We are using cutting-edge single-cell profiling methods, including … 10.1038/s41579-020-0381-4 10.1038/s41396-020-0637-z 10.1038/s41477-024-01666-3 10.1016/j.celrep.2023.112676 … (UC Merced Intern) Ruoxi Zhao (UC Merced Intern) Alex Pennacchio (Occidental College Intern) Cristian Espinosa (UC …
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Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation
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The genome of the intracellular bacterium of the coastal bivalve, Solemya velum: a blueprint for thriving in and out of symbiosis
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A transcriptomic atlas of acute stress response to low pH in multiple Issatchenkia orientalis strains.
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How Filamentous Fungi Sense Food
… regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University … The fungi are similarly armed with a variety of PCWDEs to first break down the components of plant cell walls, which … expression and regulation of protein-coding genes. This first paper integrating multi-omics data from this JGI …
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Digging into Microbial Ecosystems Deep Underground
… and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re looking … The video complements a recently published paper with first author Amundson in the journal Microbiome . The work … Letters of Intent are due March 16, 2022 to freely access resources at multiple DOE user facilities through the …
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DAS Tool for Genome Reconstruction from Metagenomes
… and improved upon a tool that combines existing DNA sequence binning algorithms, allowing them to reconstruct … of the Emerging Technologies Opportunity Program in 2013, a team of researchers has been working on improving … genomes from sequences generated from environmental samples. The work aligns with the ETOP mission of providing …
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