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New Research Sheds Light on Diversity in the Deep Sea
Energy Joint Genome Institute (Community Science Program award 339, lead Peter Girguis) for sequencing several of the …
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Gut Fungi: Unexpected Source of Novel Chemicals
… finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy (DOE) Joint …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to make inferences about the biogeographic … giant virus genomes reconstructed from environmental sequences is still challenging and even with this study we …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… to be removed. All told, the disease has accounted for upwards of $30 billion in losses , including the death of tens … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop … … Publication: Tyler BM et al. Phytophthora genome sequences uncover evolutionary origins and mechanisms of …
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A Complex Confection Decoded: Sugarcane Reference Genome
… quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in this effort. Sequencing and assembling the genome …
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10 From JGI on the 2019 Highly Cited Researchers List
Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help bacteria … resist foreign genetic elements by incorporating short sequences from infecting viruses and phages. In these sequences are virus fragments called spacers, that indicate …
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Daniel Udwary
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… also received a DOE  Early Career Research Program (ECRP) award in 2021, which aims in part to build off of this work. …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… also received a DOE  Early Career Research Program (ECRP) award in 2021, which aims in part to build off of this work. …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes … (CSP) , as several approved proposals have contributed toward filling gaps on the fungal Tree of Life, including …
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FICUS Overview
… at JGI and the other participating facilities, is then forwarded to DOE for final approval.  Following DOE approval, …
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