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You Can Move, But You Can’t Hide
… forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  … MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the … must examine the interactions that happen between tiny organisms (microbes) located in soils and water. MGEs like …
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired … six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields ranging from …
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Eelgrass Proves to Be Much Younger Than We Thought
… less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading around … locations.  One group investigated changes in protein sequences, while others analyzed single point mutations … This study was supported by a PhD scholarship from the China Scholarship Council to L.Y. (number 201704910807), by a …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the University of California, San Diego. As the … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in Molecular Biology, …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… On February 8, 2024, the DOE Joint Genome Institute and the Environmental Molecular Sciences … FY2024 EMSL-JGI FICUS collaborative proposal call . Letters of Intent for the joint call are due March 7, 2024. The … Q(uestion) 1: Can researchers perform suggested treatments in the NEON sampling points? A(nswer): Michael SanClements …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers to the CSP  … and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … in their proposal as long as they’re staying under the sequence cap? A(nswer): Proposals that are looking at …
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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … Through the JGI’s Community Science Program , JGI sequenced and assembled near-complete genomes of P. hallii … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and … microbes — and the enzymes that would be produced by microorganisms — out,” said JGI user/collaborator Michelle …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. … of RIViT-seq to other transcription factors and even other organisms can fuel a deeper understanding of these …
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