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Harnessing BER-funded data resources, researchers built an interactive and … such as ruminant guts, sediments, and anaerobic bioreactors. Aside from producing energy that the organisms …

JGI-led team significantly expands the global diversity of large and … genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to make inferences about the biogeographic …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … Institute State University, was released to the public in a highly-cited 2006 publication in the journal Science . This … of millions of trees in California alone. With the genome sequence in hand, the UC team led the charge to develop …

Large-scale comparative analysis leads to identification of … under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … of metagenome-assembled genomes (MAGs) directly from sequenced environmental samples without needing to cultivate …

Machine learning methods were applied on sequenced fungal … through the 1000 Fungal Genomes Project, including 55 newly-sequenced species.  The Impact The class  Dothideomycetes …

To set up flexible, repeatable experiments on plants and microbes, Trent Northen’s group at Berkeley Lab …

Sugarcane was the last major crop without a reference quality genome … Community Science Program; in 2018, a monoploid reference sequence of sugarcane was published as a step forward in …

As warm-adapted microbes edge polewards, they’d oust … than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … After isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the …

Jan. 7: New Capabilities to Study Secondary Metabolism   … expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …

Uri Neri is a computational biologist who spends his days wrangling viral … messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our code would …

The Facilities Integrating Collaborations for User Science (FICUS) initiative was established …

Virophages are small viruses with double-stranded DNA genomes that … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … they were able to identify 44,221 total virophage partial sequences, including over 28,000 unique MCP sequences.  …